The imputation part is fine, masking zeros and computing column means is a few lines.
First, compute the mean of non-zero entries for each column, handling potential all-zero columns by falling back to a global mean or zero. Then replace zeros with these column means and standardize each column using the mean and standard deviation of the imputed data. Use numpy or pandas for efficient vectorized operations, and validate the output with assertions.
Pro tip: Mention that you would avoid data leakage by computing imputation and standardization statistics only on the training set if this is part of a larger pipeline. Also, discuss how to handle columns with all zeros to prevent division by zero during standardization.
Identify that zeros represent missing values and that all other values are positive floats. Check for columns that are entirely zeros, as these require special handling.
For each column, calculate the mean of non-zero entries. If a column has no non-zero entries, decide on a fallback (e.g., global mean or zero).
Replace all zeros in each column with the corresponding column mean computed in step 2.
For each column, subtract its mean and divide by its standard deviation. Handle columns with zero standard deviation (e.g., all values identical) by setting them to zero or leaving as is.
Verify that imputed columns have mean 0 and std 1 (for non-constant columns). Discuss potential issues like data leakage and the impact of imputation on variance.
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